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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121571207_121577394_R

Intron Information:

Intron Rank:
26
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
121571207 - 121577394
Intron Length:
6188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCCAT
5'SS Class:
strong_major
3'SS Sequence:
GATCACCGAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTTTTCTGATCA
Flanking Amino Acid:
APTITPGINEDESLQRLQKE
Intron Amino Acid Position:
869

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
70.6
41.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
50.5
0.01
1
44.1
37
Minor 5ss
45.6
-0.5
2.9
64.4
47
Minor BPS
58.5
0.26
1.8
71.6
40.7

Associated Gene:

Gene:
CASK
Ensembl Gene ID:
ENSAPLG00000013996
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020708
121570758 - 121781229
210472
ENSAPLT00000019277
121570758 - 121781229
210472
ENSAPLT00000043412
121570758 - 121781229
210472
ENSAPLT00000014603
121571030 - 121781229
210200
ENSAPLT00000040728
121570758 - 121781229
210472
ENSAPLT00000024607
121570758 - 121781229
210472