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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121577479_121580509_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121577479 - 121580509
Intron Length:
3031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTAACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTGTTTAACC
Flanking Amino Acid:
LIAILDVEPQALKVLRTAEF
Intron Amino Acid Position:
841

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1.1
84
30.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.7
0.44
1
63.7
41.9
Minor 5ss
47.4
-0.3
2.7
66.9
44.4
Minor BPS
71.2
0.65
1.7
80.43
34.5

Associated Gene:

Gene:
CASK
Ensembl Gene ID:
ENSAPLG00000013996
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020708
121570758 - 121781229
210472
ENSAPLT00000019277
121570758 - 121781229
210472
ENSAPLT00000043412
121570758 - 121781229
210472
ENSAPLT00000014603
121571030 - 121781229
210200
ENSAPLT00000040728
121570758 - 121781229
210472
ENSAPLT00000024607
121570758 - 121781229
210472