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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121583749_121583836_R

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
121583749 - 121583836
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTGGATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTATAATTAATT
Flanking Amino Acid:
AFKRKTLVLLGAHGVGRRHI
Intron Amino Acid Position:
746

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
80.7
34.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
59.8
0.22
1.1
59.3
46.1
Minor 5ss
43.9
-0.7
2.8
58.4
46.2
Minor BPS
59.1
0.36
1.8
76.41
39.5

Associated Gene:

Gene:
CASK
Ensembl Gene ID:
ENSAPLG00000013996
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024607
121570758 - 121781229
210472
ENSAPLT00000019277
121570758 - 121781229
210472
ENSAPLT00000014603
121571030 - 121781229
210200
ENSAPLT00000043412
121570758 - 121781229
210472
ENSAPLT00000040728
121570758 - 121781229
210472