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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121583749_121588701_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
121583749 - 121588701
Intron Length:
4953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTGGATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTATAATTAATT
Flanking Amino Acid:
KDKYLAKHNAGAHGVGRRHI
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
59.8
0.22
1.1
59.3
46.1
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
59.1
0.36
1.8
76.41
39.5

Associated Gene:

Gene:
CASK
Ensembl Gene ID:
ENSAPLG00000013996
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020708
121570758 - 121781229
210472