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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121588818_121590116_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121588818 - 121590116
Intron Length:
1299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGACTT
5'SS Class:
major
3'SS Sequence:
CTGCATATGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
ATTACAACAATT
Flanking Amino Acid:
GLIPSPELQEWRVACIAMEK
Intron Amino Acid Position:
680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
69.9
40.3
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
62.3
0.28
1.1
54.5
44.4
Minor 5ss
44.1
-0.6
3.1
62.4
43.2
Minor BPS
46.4
-0.2
2
70.32
40

Associated Gene:

Gene:
CASK
Ensembl Gene ID:
ENSAPLG00000013996
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020708
121570758 - 121781229
210472
ENSAPLT00000019277
121570758 - 121781229
210472
ENSAPLT00000043412
121570758 - 121781229
210472
ENSAPLT00000014603
121571030 - 121781229
210200
ENSAPLT00000040728
121570758 - 121781229
210472
ENSAPLT00000024607
121570758 - 121781229
210472