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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121590314_121594481_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121590314 - 121594481
Intron Length:
4168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTTTTATAAACT
Flanking Amino Acid:
GHSSTNNSVSIYVRAQFEYD
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
81.9
32.3
Major BPS
80
0.75
1
78.6
31
Major PPT
84.1
0.77
0.7
79.7
26
Minor 5ss
44.4
-0.6
3.2
66.3
44.6
Minor BPS
58.7
0.35
2
80.31
41.8

Associated Gene:

Gene:
CASK
Ensembl Gene ID:
ENSAPLG00000013996
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043412
121570758 - 121781229
210472