About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121590314_121600411_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121590314 - 121600411
Intron Length:
10098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTTTTATAAACT
Flanking Amino Acid:
SYRTQSSSCEIYVRAQFEYD
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
77.6
33.1
Major BPS
80
0.75
1
78.6
31
Major PPT
84.1
0.77
0.7
79.7
26
Minor 5ss
38.5
-1.3
3.4
55.5
48.6
Minor BPS
58.7
0.35
2
80.31
41.8

Associated Gene:

Gene:
CASK
Ensembl Gene ID:
ENSAPLG00000013996
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019277
121570758 - 121781229
210472