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Intron Name: Anas_platyrhynchos_platyrhynchos_1_121594551_121600411_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

121594551 - 121600411

Intron Length:

5861

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATGTAT

5'SS Class:

strong_major

3'SS Sequence:

TGTCTTATTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TGTTAATGAACC

Flanking Amino Acid:

SYRTQSSSCERDSPSTSRQS

Intron Amino Acid Position:

580

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

77.6

33.1

Major BPS

84.4

0.85

34.5

Major PPT

84.1

0.77

0.8

81.7

34.6

Minor 5ss

38.5

-1.3

3.4

55.5

48.6

Minor BPS

0.1

1.9

71.1

Associated Gene:

Gene:

CASK

Ensembl Gene ID:

ENSAPLG00000013996

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043412

121570758 - 121781229

210472

ENSAPLT00000040728

121570758 - 121781229

210472

ENSAPLT00000020708

121570758 - 121781229

210472

ENSAPLT00000014603

121571030 - 121781229

210200