Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121628691_121636596_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

121628691 - 121636596

Intron Length:

7906

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAGGTATC

5'SS Class:

major

3'SS Sequence:

TATTGCCCCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCCTATTTATTG

Flanking Amino Acid:

PTSSGLLAAERAVSQVLDSL

Intron Amino Acid Position:

345

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

35.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

69.1

0.43

0.8

62.5

34.4

Minor 5ss

40.6

-1

3.1

54.1

37.3

Minor BPS

47.6

-0.3

1.8

51.23

44.1

Associated Gene:

Gene:

CASK

Ensembl Gene ID:

ENSAPLG00000013996

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014603

121571030 - 121781229

210200