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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121647675_121649854_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121647675 - 121649854
Intron Length:
2180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGTAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTGCTTGTAATC
Flanking Amino Acid:
FEGIIKGKYKMNPRQWSHIS
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
29.5
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
67.6
0.4
1.1
66.7
43.1
Minor 5ss
32.3
-2
3.3
42.9
44.7
Minor BPS
49
-0.1
2
62.44
38

Associated Gene:

Gene:
CASK
Ensembl Gene ID:
ENSAPLG00000013996
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020708
121570758 - 121781229
210472
ENSAPLT00000019277
121570758 - 121781229
210472
ENSAPLT00000043412
121570758 - 121781229
210472
ENSAPLT00000014603
121571030 - 121781229
210200
ENSAPLT00000040728
121570758 - 121781229
210472
ENSAPLT00000024607
121570758 - 121781229
210472