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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121662163_121685969_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121662163 - 121685969
Intron Length:
23807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATATAATAATT
Flanking Amino Acid:
DNNIIHRDVKPHCVLLASKE
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
100
1.24
0.5
100
0
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
47.4
-0.1
1.8
66.59
37.5

Associated Gene:

Gene:
CASK
Ensembl Gene ID:
ENSAPLG00000013996
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024607
121570758 - 121781229
210472
ENSAPLT00000020708
121570758 - 121781229
210472
ENSAPLT00000019277
121570758 - 121781229
210472
ENSAPLT00000043412
121570758 - 121781229
210472
ENSAPLT00000014603
121571030 - 121781229
210200
ENSAPLT00000040728
121570758 - 121781229
210472