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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121686043_121688225_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121686043 - 121688225
Intron Length:
2183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
AGFVYSEAVASHYMRQILEA
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
CASK
Ensembl Gene ID:
ENSAPLG00000013996
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024607
121570758 - 121781229
210472
ENSAPLT00000020708
121570758 - 121781229
210472
ENSAPLT00000019277
121570758 - 121781229
210472
ENSAPLT00000043412
121570758 - 121781229
210472
ENSAPLT00000014603
121571030 - 121781229
210200
ENSAPLT00000040728
121570758 - 121781229
210472