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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121727077_121781170_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121727077 - 121781170
Intron Length:
54094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
ATGTGTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTGCTGATTT
Flanking Amino Acid:
DVYELCEVIGKGPFSVVRRC
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
68.6
36.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.7
0.53
1
69.7
45.4
Minor 5ss
31.8
-2.1
2.8
37.4
33.2
Minor BPS
49.5
0.04
2.1
74.02
42.9

Associated Gene:

Gene:
CASK
Ensembl Gene ID:
ENSAPLG00000013996
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024607
121570758 - 121781229
210472
ENSAPLT00000020708
121570758 - 121781229
210472
ENSAPLT00000019277
121570758 - 121781229
210472
ENSAPLT00000043412
121570758 - 121781229
210472
ENSAPLT00000014603
121571030 - 121781229
210200
ENSAPLT00000040728
121570758 - 121781229
210472