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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12175130_12178160_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12175130 - 12178160
Intron Length:
3031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCCACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTATTCTAACA
Flanking Amino Acid:
SKCPAMQPRPVMQIMQRDCA
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
81.4
31.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
78
0.63
0.9
71.4
39.5
Minor 5ss
43.6
-0.7
2.6
56.3
42.5
Minor BPS
61.9
0.37
1.7
76.33
34.5

Associated Gene:

Gene:
FGL2
Ensembl Gene ID:
ENSAPLG00000012129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012624
12174328 - 12179424
5097