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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12187814_12195306_R

Intron Information:

Intron Rank:
130769
Intron Class:
major
Intron Phase:
Intron Coordinates:
12187814 - 12195306
Intron Length:
7493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGCCT
5'SS Class:
major
3'SS Sequence:
TCTTACTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATCTAATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.4
43.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
76.8
0.6
0.8
69.5
36.4
Minor 5ss
33.9
-1.8
3.4
49.8
46
Minor BPS
63.5
0.5
1.8
80.92
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017599
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030325
12186789 - 12195749
8961