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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121892379_121892518_F

Intron Information:

Intron Rank:
144789
Intron Class:
major
Intron Phase:
Intron Coordinates:
121892379 - 121892518
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTTTGTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
78.3
30.5
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
82.8
0.74
0.7
80
25.3
Minor 5ss
34.5
-1.8
2.8
38.6
41.7
Minor BPS
58.2
0.12
2
69.97
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028044
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034766
121892252 - 121904337
12086