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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121892769_121904061_F

Intron Information:

Intron Rank:
144790
Intron Class:
major
Intron Phase:
Intron Coordinates:
121892769 - 121904061
Intron Length:
11293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ACATTTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
CTATATCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
33.8
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
71
0.47
1
66.4
38.8
Minor 5ss
27.1
-2.6
3
26.1
37
Minor BPS
54.4
0.22
1.9
74.52
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028044
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045102
121892519 - 121905644
13126
ENSAPLT00000034766
121892252 - 121904337
12086