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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121997098_122004065_R

Intron Information:

Intron Rank:
145421
Intron Class:
major
Intron Phase:
Intron Coordinates:
121997098 - 122004065
Intron Length:
6968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGCGTTCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
ATTTTGGTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.5
41.3
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
79
0.65
0.9
72.1
38
Minor 5ss
32.5
-2
3
38.1
40.9
Minor BPS
44.2
-0.3
2.7
73.16
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025634
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038407
121996199 - 122004357
8159