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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122030900_122031190_R

Intron Information:

Intron Rank:
141160
Intron Class:
major
Intron Phase:
Intron Coordinates:
122030900 - 122031190
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAACACAT
5'SS Class:
major
3'SS Sequence:
TAGCAATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCATATAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.2
64.3
41.6
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
65.7
0.35
1
57.7
41.7
Minor 5ss
39.3
-1.2
3.2
53.7
44.4
Minor BPS
54.5
0
2.1
69.99
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023278
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020601
122030449 - 122052805
22357