About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12203266_12216354_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12203266 - 12216354
Intron Length:
13089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAACAA
5'SS Class:
major
3'SS Sequence:
ACTCTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GAATTTTAAACT
Flanking Amino Acid:
KGTSVLQSIKSHKIDIRTKG
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
61.3
39.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.5
0.82
0.7
84.4
29.8
Minor 5ss
29.6
-2.3
3.3
38.7
46.3
Minor BPS
56.9
0.29
1.6
70.16
40.7

Associated Gene:

Gene:
FAM185A
Ensembl Gene ID:
ENSAPLG00000027009
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041273
12196202 - 12244457
48256