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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122061184_122061901_F

Intron Information:

Intron Rank:
124704
Intron Class:
major
Intron Phase:
Intron Coordinates:
122061184 - 122061901
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TCTGCCTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TCTGCCTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
82.6
30.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
73.9
0.54
0.8
68.4
31.9
Minor 5ss
48.7
-0.1
2.8
73.2
37.2
Minor BPS
60
0.31
1.9
70.44
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017216
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019679
122060438 - 122063105
2668