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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122062040_122062297_F

Intron Information:

Intron Rank:
124705
Intron Class:
major
Intron Phase:
Intron Coordinates:
122062040 - 122062297
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
CTTGCTTTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TCTGCAATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65.2
40.8
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
74.9
0.56
1
68.8
42
Minor 5ss
29.1
-2.4
3.1
35.7
41.3
Minor BPS
55.1
0.24
2
78.09
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017216
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041373
122051692 - 122063105
11414
ENSAPLT00000019679
122060438 - 122063105
2668