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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122070468_122071772_F

Intron Information:

Intron Rank:
146296
Intron Class:
major
Intron Phase:
Intron Coordinates:
122070468 - 122071772
Intron Length:
1305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
GTGTCATTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73
31.2
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
81.7
0.71
0.8
78.4
34.7
Minor 5ss
35.8
-1.6
3.3
46.4
48.9
Minor BPS
53
0.17
2
73.76
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028819
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022406
122070405 - 122075898
5494