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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122072061_122072639_F

Intron Information:

Intron Rank:
146297
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
122072061 - 122072639
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATAATA
5'SS Class:
major
3'SS Sequence:
CCTGTATGACAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
0.9
78.8
29.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
50.7
0.02
1.2
49.5
42.2
Minor 5ss
31.7
-2.1
3
40.3
45.4
Minor BPS
60.5
0.31
2
79.03
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028819
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022406
122070405 - 122075898
5494