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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122073122_122074190_F

Intron Information:

Intron Rank:
146301
Intron Class:
major
Intron Phase:
Intron Coordinates:
122073122 - 122074190
Intron Length:
1069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGACAG
5'SS Class:
major
3'SS Sequence:
TGCCTGTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
TTGCTAATAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
58.8
42
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
70.7
0.47
0.9
68.7
37.2
Minor 5ss
24.8
-2.9
3
29.3
43.3
Minor BPS
49.4
-0
1.9
65.89
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028819
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033831
122072640 - 122077197
4558