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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122102885_122103780_R

Intron Information:

Intron Rank:
143430
Intron Class:
major
Intron Phase:
Intron Coordinates:
122102885 - 122103780
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTATCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTATGTCTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
79.4
0.66
0.9
70.4
40.3
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
44.2
-0.3
2.2
64.92
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024471
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048199
122102823 - 122111053
8231