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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122103327_122108780_R

Intron Information:

Intron Rank:
143422
Intron Class:
major
Intron Phase:
Intron Coordinates:
122103327 - 122108780
Intron Length:
5454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
ATTCTTTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTGTGCTGAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
81.7
0.71
0.7
81.2
30
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
49.6
-0
2.2
66.89
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024471
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046001
122102823 - 122109166
6344
ENSAPLT00000037858
122102823 - 122111477
8655
ENSAPLT00000024862
122102823 - 122111477
8655