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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122103874_122108780_R

Intron Information:

Intron Rank:
143424
Intron Class:
major
Intron Phase:
Intron Coordinates:
122103874 - 122108780
Intron Length:
4907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTATATTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CATTTTATATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.6
0.71
0.9
73.8
40.6
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
46.1
-0.3
1.8
55.29
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024471
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048199
122102823 - 122111053
8231
ENSAPLT00000025166
122103666 - 122111053
7388