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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122108841_122111032_R

Intron Information:

Intron Rank:
143423
Intron Class:
major
Intron Phase:
Intron Coordinates:
122108841 - 122111032
Intron Length:
2192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTGTC
5'SS Class:
major
3'SS Sequence:
CTTCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
GATTCCTGACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
72.1
39.4
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
89.1
0.88
0.6
84.3
23.6
Minor 5ss
36.3
-1.5
3.6
52.3
45
Minor BPS
58.4
0.34
1.8
75.1
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024471
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024862
122102823 - 122111477
8655
ENSAPLT00000048199
122102823 - 122111053
8231
ENSAPLT00000037858
122102823 - 122111477
8655
ENSAPLT00000025166
122103666 - 122111053
7388