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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122147593_122183004_R

Intron Information:

Intron Rank:
147583
Intron Class:
major
Intron Phase:
Intron Coordinates:
122147593 - 122183004
Intron Length:
35412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTATCCATCAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
84.8
26.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
75.1
0.56
1
69.4
41.7
Minor 5ss
38
-1.3
2.7
50.1
46.4
Minor BPS
52.9
0.17
2.2
79.51
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026763
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037107
122146580 - 122184617
38038