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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122150559_122155704_F

Intron Information:

Intron Rank:
125002
Intron Class:
major
Intron Phase:
Intron Coordinates:
122150559 - 122155704
Intron Length:
5146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATTTACTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
85.7
0.8
0.8
80.8
30.9
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
51.7
0.13
2
75.92
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017308
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019402
122149276 - 122156205
6930