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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122150559_122159932_F

Intron Information:

Intron Rank:
125000
Intron Class:
major
Intron Phase:
Intron Coordinates:
122150559 - 122159932
Intron Length:
9374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TCTTCCCTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
82.6
0.73
0.7
76.4
25.9
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
48.7
-0.2
2.1
61.25
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017308
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018980
122150389 - 122161958
11570