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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122160035_122160761_F

Intron Information:

Intron Rank:
125001
Intron Class:
major
Intron Phase:
Intron Coordinates:
122160035 - 122160761
Intron Length:
727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTTCCCTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
76.2
39.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
77.7
0.62
0.9
69.6
35.7
Minor 5ss
43.5
-0.7
2.9
52.9
44.1
Minor BPS
60.5
0.31
2
75.04
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017308
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018980
122150389 - 122161958
11570