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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12216448_12221422_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12216448 - 12221422
Intron Length:
4975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TTATTTCTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
GTTTATTTAAGT
Flanking Amino Acid:
NTDIHATEKGSVNIEKLQGS
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
70.9
40.9
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
81.8
0.72
0.7
81.7
30.1
Minor 5ss
37.1
-1.5
2.8
43.3
43.8
Minor BPS
63.6
0.5
1.8
81.57
39.9

Associated Gene:

Gene:
FAM185A
Ensembl Gene ID:
ENSAPLG00000027009
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041273
12196202 - 12244457
48256