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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122165460_122183004_R

Intron Information:

Intron Rank:
147580
Intron Class:
major
Intron Phase:
Intron Coordinates:
122165460 - 122183004
Intron Length:
17545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGGTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGACATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
84.8
26.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.7
0.67
0.9
75.9
38
Minor 5ss
38
-1.3
2.7
50.1
46.4
Minor BPS
59.5
0.38
1.5
72.32
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026763
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027423
122165137 - 122184870
19734