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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122178561_122183004_R

Intron Information:

Intron Rank:
147577
Intron Class:
major
Intron Phase:
Intron Coordinates:
122178561 - 122183004
Intron Length:
4444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGGCTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
GCATCTTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
84.8
26.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
76.8
0.6
0.9
73.1
37.3
Minor 5ss
38
-1.3
2.7
50.1
46.4
Minor BPS
49.5
0.04
1.8
65.72
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026763
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025906
122178202 - 122184870
6669