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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122181102_122183004_R

Intron Information:

Intron Rank:
147590
Intron Class:
major
Intron Phase:
Intron Coordinates:
122181102 - 122183004
Intron Length:
1903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTAAT
5'SS Class:
strong_major
3'SS Sequence:
AACCTCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
CTTGCTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
84.8
26.4
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
68.6
0.42
0.9
61.3
34.1
Minor 5ss
38
-1.3
2.7
50.1
46.4
Minor BPS
74
0.73
1.4
77.59
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026763
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043276
122180460 - 122184617
4158