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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122184107_122184224_R

Intron Information:

Intron Rank:
147582
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
122184107 - 122184224
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGCCTC
5'SS Class:
weak_major
3'SS Sequence:
ATTAATTAATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTAATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.6
0.3
1.4
58
47.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
61.9
0.27
1
60.9
44
Minor 5ss
43.4
-0.7
3.1
55.5
42.1
Minor BPS
61.2
0.43
1.8
78.37
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026763
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027423
122165137 - 122184870
19734
ENSAPLT00000043276
122180460 - 122184617
4158
ENSAPLT00000038539
122178202 - 122184870
6669
ENSAPLT00000037107
122146580 - 122184617
38038