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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122239840_122241291_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122239840 - 122241291
Intron Length:
1452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAAT
5'SS Class:
major
3'SS Sequence:
GTTTGTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTTGTTTAATG
Flanking Amino Acid:
RIFSVTNGGQERKFVGGSGQ
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.2
36
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
77.3
0.61
0.9
74.7
40
Minor 5ss
33.4
-1.9
3.3
48.6
47.1
Minor BPS
67.9
0.42
1.8
74.65
38.4

Associated Gene:

Gene:
MAOA
Ensembl Gene ID:
ENSAPLG00000013230
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013855
122211120 - 122250943
39824