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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122246753_122247177_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122246753 - 122247177
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGACAT
5'SS Class:
major
3'SS Sequence:
CTAATACTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TACTCTCTAATG
Flanking Amino Acid:
KAMGMEEALHPVHYEEKNWT
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.7
36.9
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
73.6
0.53
1
65.7
39.8
Minor 5ss
36.1
-1.6
3.3
53
43.9
Minor BPS
56.2
0.06
1.7
60.86
41.5

Associated Gene:

Gene:
MAOA
Ensembl Gene ID:
ENSAPLG00000013230
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018818
122211120 - 122250844
39725
ENSAPLT00000013855
122211120 - 122250943
39824