Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122261_168400_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

122261 - 168400

Intron Length:

46140

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTCCCACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAC

U12 Branch Point Sequence:

TCTCACTCACCT

Flanking Amino Acid:

IQLNRGEAVKVLSIGEGGFW

Intron Amino Acid Position:

456

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

65.8

40.2

Major BPS

0.87

0.8

85.6

Major PPT

85.2

0.79

0.7

80.5

Minor 5ss

27.1

-2.6

2.9

24.3

36.8

Minor BPS

48.3

-0

70.84

45.5

Associated Gene:

Gene:

SHANK3

Ensembl Gene ID:

ENSAPLG00000008650

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009001

4776 - 289936

285161

ENSAPLT00000009009

4776 - 289936

285161