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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122263379_122263782_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122263379 - 122263782
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
GCTCTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
GCTCTCTCCACA
Flanking Amino Acid:
EIWKPEPESIDVPALPITTT
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
82.6
30.5
Major BPS
84.6
0.86
1
74
41.2
Major PPT
74.8
0.56
0.8
68.3
32.1
Minor 5ss
48.7
-0.1
2.8
73.2
37.2
Minor BPS
46.6
-0.2
1.9
57.33
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012540
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013117
122263223 - 122279894
16672