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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122265529_122266708_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122265529 - 122266708
Intron Length:
1180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GCTGACATGACT
Flanking Amino Acid:
FPPGIMTQYGRILRQPVGRI
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
70.6
42.2
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
69.5
0.44
1
72.3
26.4
Minor 5ss
37.4
-1.4
3.5
56
48.2
Minor BPS
47.5
-0.1
1.9
65.99
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012540
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013117
122263223 - 122279894
16672