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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122266949_122271932_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
122266949 - 122271932
Intron Length:
4984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GTGCTGCATTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTTATTTTATT
Flanking Amino Acid:
KPDGSFPAIIGDLLNVLIMS
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.3
34.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
55.2
0.12
1.2
57.2
42.8
Minor 5ss
29.3
-2.4
3.3
29.9
43.1
Minor BPS
57.2
0.31
1.8
77.49
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012540
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013117
122263223 - 122279894
16672