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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122273646_122274314_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122273646 - 122274314
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATGAAA
5'SS Class:
major
3'SS Sequence:
ATTTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
TTATGTATAATT
Flanking Amino Acid:
VETLDHELYEGKYVISAIPP
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
33
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
86.8
0.83
0.7
81.7
29.5
Minor 5ss
26.2
-2.7
2.9
30.5
42.9
Minor BPS
54.2
0.21
2
77.42
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012540
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013117
122263223 - 122279894
16672