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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122274465_122275686_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122274465 - 122275686
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTCA
5'SS Class:
major
3'SS Sequence:
TTGTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATCAT
U12 Branch Point Sequence:
GAGTCATCATTT
Flanking Amino Acid:
RIFSTTNGGQERKFVGGSGQ
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
63.8
36.5
Major BPS
75.6
0.64
1.1
76.2
37.5
Major PPT
83.9
0.76
0.9
81.2
36.5
Minor 5ss
43.2
-0.7
3
57
47.2
Minor BPS
44.6
-0.3
2
59.69
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012540
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013117
122263223 - 122279894
16672