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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122275829_122278726_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122275829 - 122278726
Intron Length:
2898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATTTACTTACTT
Flanking Amino Acid:
QDFIDKICWTNAAKSFATLF
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
77.9
29.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
78.6
0.64
0.9
72.9
37.4
Minor 5ss
35.5
-1.6
3
44.2
37.3
Minor BPS
64.8
0.54
1.8
83.35
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012540
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013117
122263223 - 122279894
16672