About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122278819_122279867_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122278819 - 122279867
Intron Length:
1049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGCAG
5'SS Class:
major
3'SS Sequence:
TATGTTACCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATGTTACCT
Flanking Amino Acid:
RTMDEMGKEIPNEAPWKAP
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
62.2
43.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.7
0.44
0.9
67.6
38.6
Minor 5ss
36.2
-1.6
3.2
46.2
49.1
Minor BPS
51.5
0.13
2.3
79.88
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012540
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013117
122263223 - 122279894
16672