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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12233220_12235306_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12233220 - 12235306
Intron Length:
2087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGCAAA
5'SS Class:
major
3'SS Sequence:
AAATTTATATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTCATTTAAAT
Flanking Amino Acid:
LREVDLKSQKGSITVKVPAS
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.3
36.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
66.9
0.38
1.1
64.8
44.6
Minor 5ss
35.1
-1.7
2.7
40.3
45.5
Minor BPS
65.8
0.58
1.6
84.06
35.9

Associated Gene:

Gene:
FAM185A
Ensembl Gene ID:
ENSAPLG00000027009
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041273
12196202 - 12244457
48256