About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122419923_122422487_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122419923 - 122422487
Intron Length:
2565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACCA
5'SS Class:
strong_major
3'SS Sequence:
TTACTGATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TATTACTGATTT
Flanking Amino Acid:
AFQTIRLPLKNEDDWNGQPP
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.7
37.5
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
77.5
0.62
0.9
74.2
40
Minor 5ss
31.6
-2.1
3.1
40.3
45.3
Minor BPS
52.8
0.17
1.9
75.45
41

Associated Gene:

Gene:
EFHC2
Ensembl Gene ID:
ENSAPLG00000012158
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012680
122419827 - 122470616
50790